The Linnets reached two more FA Trophy finals at Wembley, going down to Wycombe Wanderers (4-1) in 1993 and Woking (2-1) in 1994. Despite their success on the field, disaster struck three times off the field during the 1993/94 season. A perimeter wall collapsed in a FA Cup tie against Hull, the roof blew off a stand in high winds, and the main stand was gutted by fire. With the club crippled by the cost of rebuilding their Canal Street home, Runcorn suffered on the pitch, and were relegated for the first time in their history in 1995/96 after fifteen years of top-flight non-league football. Back in the Northern Premier League the club won the Presidents Cup in 1997/98.